Installation of base imageΒΆ

  1. Boot a recent Ubuntu on Amazon (wily 15.10 image or later)
  2. Log in as user ‘ubuntu’.
  3. Run:

sudo apt-get -y update && sudo apt-get -y install r-base python3-matplotlib libzmq3-dev python3.5-dev

texlive-latex-extra texlive-latex-recommended python3-virtualenv trimmomatic fastqc python-pip python-dev bowtie samtools zlib1g-dev ncurses-dev

sudo pip install -U setuptools khmer==2.0 jupyter jupyter_client ipython pandas

and done!

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