2016 / Aug / mRNAseq on non-model organisms¶
Parts of this workshop were given on August 18th and 19th, 2016, by C. Titus Brown and Phillip T. Brooks, at the University of Puerto Rico - Rio Pedras campus.
For more information, please contact Titus directly.
We have an EtherPad for sharing text and asking questions.
Tutorials:
- Welcome!
- Non-model organisms and RNAseq
- Logging in to your Amazon instance.
- Short read quality and trimming
- Running digital normalization
- Running the actual assembly
- Assembly statistics and evaluation
- Quantification and Differential Expression of RNAseq with salmon
- Miscellaneous advice
- More resources
- Miscellaneous questions
- Tips and Tricks for working with Remote Computers
- Installation of base image
Technical information¶
The github repository for this workshop is publicly available at https://github.com/ngs-docs/2016-mar-nonmodel.
LICENSE: This documentation and all textual/graphic site content is licensed under the Creative Commons - 0 License (CC0) -- fork @ github. Presentations (PPT/PDF) and PDFs are the property of their respective owners and are under the terms indicated within the presentation.